Collection: 1999 Used Honda Transmissions For Sale

11
verified 1999 Honda transmissions
Customer Reviews
Up to 3 yrs
extended warranty available
Photos before
shipment

1999 Used Honda Transmissions For Sale

1999 is the first model year of the second-generation Odyssey, and that single change matters more than anything else on this page: the 3.5L V6 van shares no driveline at all with the smaller four-cylinder Odyssey sold the year before. Every unit here is a stepped automatic or a manual — Honda sold no CVT in this year, so nothing on this page is a belt drive. Text your VIN and we confirm in writing which of the 11 units fits before you pay.

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Warranty On Every Unit
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Photos Before Shipment
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ASE-Tested & Verified
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Free Nationwide Shipping
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30-Day Money-Back
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1999 Honda Transmission Families

Which gearbox sits behind which 1999 Honda, and how many of each we hold today.

Transmission family Fits (1999) In stock
Civic 1.6L SOHC automatic (listed AT), VTEC Civic EX and Si-spec VTEC cars, sixth generation — its own final drive 1
Civic 1.6L SOHC automatic (listed AT), CNG Civic GX natural-gas sedan only — fleet-built, not interchangeable with petrol cars 1
Civic 1.6L SOHC manual (listed MT), Base, coupe Civic DX/LX/VP coupe — the listing names the coupe body 1
Civic 1.6L SOHC manual (listed MT), Base, sedan Civic DX/LX/VP sedan — listed separately from the coupe unit 1
Accord 2.3L automatic (listed AT), Japan built Sixth-generation Accord four-cylinder, Japan-built unit — build origin is stated on this listing 1
CR-V manual (listed MT), four-wheel drive First-generation CR-V Real Time 4WD manual — carries the rear transfer provision 1
Prelude automatic (listed AT), Base Fifth-generation Prelude Base automatic 1
Prelude manual (listed MT), Base Fifth-generation Prelude Base manual 1
Prelude manual (listed MT), Type SH Prelude Type SH only — the ATTS torque-steering front unit, never a Base swap 1
Odyssey 3.5L V6 automatic (listed AT) Second-generation Odyssey — 1999 is its first year, and it shares nothing with the 1998 four-cylinder van 1
Passport automatic (listed AT), 4x4 Passport 4x4 — Isuzu-built longitudinal body-on-frame, shares nothing with Honda's own units 1
Total 11

Other Honda Model Years

Every model year we hold Honda transmissions for. Years without a link are in stock but have no year page yet — text us your VIN.

Why Buy a 1999 Honda Transmission from Auto Power Source

Every 1999 Honda transmission we list is a real unit on a real shelf, inspected and recorded before it goes on the site. We do not list a gearbox we cannot put our hands on, and the count at the top of this page is the live count of units in stock today, not a catalogue of what the model year could theoretically carry.

The Odyssey is the trap in this model year. 1999 is the first year of the second-generation van with the 3.5L V6, and the 1998 Odyssey was a narrower four-cylinder vehicle on a completely different transaxle. A seller who advertises a "1998-2004 Odyssey transmission" is describing two unrelated parts. We list the 1999 unit as what it is and nothing wider.

The Civic in 1999 came in several specifications off the same 1.6L SOHC engine, and we hold four of them: the VTEC automatic, the natural-gas GX automatic, and the Base manual in both coupe and sedan listings. Each is geared for its own car. A unit that bolts up is not the same thing as a unit that is right, and your VIN tells us which one you have.

The Prelude Type SH is kept as its own part, not a Base Prelude with a badge. It carries the ATTS torque-steering front unit and does not interchange with the Base car in either direction. The Passport is the other outlier — an Isuzu-built, body-on-frame 4x4 with a longitudinal gearbox that shares nothing with the transverse units in the rest of the 1999 line-up.

Everything ships with the same warranty and the same money-back terms as the rest of our catalogue, and our ASE-certified technicians confirm the match against your VIN before a unit leaves the shelf. Text +1-307-441-5554, call 1-877-313-8995, or email info@autopowersource.com and we answer with the specific unit, not a maybe.

📱 Fastest way to match: text us your VIN, get options in minutes.Text Your VIN →

Your 1999 Honda Transmission Options: Compared

Most 1999 Honda owners face four real choices when the transmission fails:

← Swipe sideways to see all columns →
Option Cost Reliability Warranty Fitment Match
Used OEM (this collection) $$$ Best Value High — tested Included VIN-matched
New OEM (dealer) $$$$$ 2-4× more High Manufacturer Exact
Aftermarket / Reman $$$$ Varies 6-12 mo May adapt
Junkyard $ Cheapest Unknown None DIY

Tested used OEM hits the sweet spot — same engineering as new, fraction of the cost.

1999 Honda Transmission Buying Guide

5 things to verify before buying a used 1999 Honda transmission:

  1. Settle automatic or manual first. Every 1999 Honda unit we hold is listed as AT or MT, and that is the hardest line in the catalogue. The bell housing, the mounts and the shift provision all change. If you are not certain which your car left the factory with, your VIN answers it.
  2. On an Odyssey, check the generation, not just the year range. The 1999 van is the first of the 3.5L V6 generation. A 1998 Odyssey transaxle is a different part on a different vehicle, so a listing that spans both years is describing two things at once.
  3. Know which Civic you have. VTEC, CNG and Base are different specifications of the same 1.6L SOHC engine, and each gearbox is geared for its own car. The CNG GX unit in particular is fleet-built and does not belong in a petrol Civic.
  4. Treat Prelude Type SH as its own part. The Type SH carries the ATTS torque-steering front unit. It is not a Base Prelude gearbox with a different badge, and the two do not interchange in either direction.
  5. Confirm the match with your own VIN before you order. Your VIN settles the transmission code, drivetrain and build split in one step. Text it to +1-307-441-5554 and we will confirm in writing exactly which unit fits your vehicle before you pay.

Our ASE-certified technicians verify every one of these points against your VIN before any unit ships.

📞 Need help choosing the right 1999 Honda transmission? Talk to our team live.Call 1-877-313-8995

Frequently Asked Questions

How many 1999 Honda transmissions do you have in stock?
Eleven, as of this page's last inventory refresh: four Civic units, three Prelude, and one each for the Accord, CR-V, Odyssey and Passport. The number in the header is the live active count, not a model-year catalogue.
Are any 1999 Honda transmissions CVTs?
No. Honda sold no CVT in the 1999 line-up we stock, so every unit on this page is either a conventional stepped automatic or a manual gearbox. If a listing elsewhere offers you a 1999 Honda CVT, it is not one of these vehicles.
Will a 1998 Odyssey transmission fit my 1999 Odyssey?
No. 1999 is the first year of the second-generation Odyssey with the 3.5L V6, and the 1998 van was a smaller four-cylinder vehicle on an unrelated transaxle. The two are different parts despite sitting next to each other in the model years.
What does "Japan built" mean on the Accord listing?
It is the build origin stated on that unit. Sixth-generation Accords were assembled in more than one plant and the listing records which one this gearbox came from, so we can match it rather than guess. Your VIN confirms which build your car is.
Do you have a 1999 Civic Base automatic?
Not in current stock. The 1999 Civic units we hold are the VTEC automatic, the CNG automatic, and the Base manual in coupe and sedan. Text your VIN and we will source the Base automatic if that is what you need.
Is the Passport transmission a Honda part?
Mechanically it is Isuzu. The 1999 Passport is a rebadged Isuzu Rodeo with a longitudinal, body-on-frame driveline, so its gearbox shares nothing with the transverse units in the Civic, Accord, CR-V, Prelude or Odyssey.
Why is the CR-V listed only as a manual?
That is what is on the shelf for 1999 — a four-wheel-drive manual. The 4WD unit carries the rear output provision and a front-drive unit cannot be converted to it, so we will not offer one as a substitute.
What warranty comes with a 1999 Honda transmission?
The same warranty and money-back terms as every other unit we ship, with the coverage stated in writing before you pay. Our ASE-certified technicians verify the unit against your VIN first. Call 1-877-313-8995 or email info@autopowersource.com for the written terms.
🏆 Earn $500 with Our Rewards Program
Every Honda transmission you buy earns rewards. 10 orders (yours or referred) = $500 cash credit. Silver, Gold, and Platinum tiers with discounts, priority support, and private inventory access.
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100K+
Engines+Transmissions In Stock
0%
fitment-related returns
All 50
states covered, free freight
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brands covered

Our 6-Step Inspection & Shipping Process

Every 1999 Honda transmission we ship has been through these six steps:

1. VIN-Matching
We match the donor VIN to your VIN to confirm the case code, engine pairing, and FWD vs AWD transfer output.
2. Tested & Verified
ASE-certified technicians Shift-Test every gear under load. CVT units get a fluid-condition and belt inspection; 2003–2009 V6 automatics are checked for torque-converter shudder.
3. Noise & Smoke Verification
Units are run to verify normal mechanical sound and clean operation — catches internal wear static tests miss.
4. Visual Inspection
Every accessible component is inspected: turbos, manifolds, valve covers, housings, accessories, sensor harnesses.
5. Photograph & Catalog
Multi-angle photos sent to you BEFORE we ship for your approval.
6. Palletize & Ship
Strapped on a heavy-duty wooden pallet, shipped via freight at no charge.

Our Photos-Before-Shipment Guarantee

Before any transmission leaves our warehouse, we send you multi-angle photographs. You approve. If you do not approve, you get every dollar back — no questions, no restocking fees, no return freight charges. On top of 30-day money-back and the warranty included with every unit. Browse all 11 1999 Honda transmissions below.

✉ Email Us at info@autopowersource.com